You can add a cronjob for rkhunter to have a checkup every day at a certain hour. Cronjob is very useful. With the addition of tasks you can automatize manual job that you are doing every day and save a lot of time. You can for example launch php page that automatically update certain part of your databse, etc.
In this example, rkhunter will check the server every day at 04:05 AM.
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